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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24031423_24031698_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24031423 - 24031698
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTACAC
U12 Branch Point Sequence:
GTTACACCAGCC
Flanking Amino Acid:
GSASMSALYKVLFKLLLGSA
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
55.1
0.13
1.2
66.7
40
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
40
-0.7
2.1
55.09
41.9

Associated Gene:

Gene:
SLC35F3
Ensembl Gene ID:
ENSAPLG00000008027
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030464
23982926 - 24034992
52067
ENSAPLT00000008332
23899756 - 24034992
135237
ENSAPLT00000047185
23867298 - 24034992
167695
ENSAPLT00000043199
23849816 - 24034992
185177
ENSAPLT00000033103
23982538 - 24034992
52455