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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24031892_24032456_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24031892 - 24032456
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCCTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTTCACTGGAGT
Flanking Amino Acid:
NLCGFSILLLTFNILLNFGI
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
70.5
35.4
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
90.2
0.9
0.6
88.8
20.5
Minor 5ss
31.8
-2.1
2.6
31.3
35.7
Minor BPS
48.9
-0
2
74.88
41.5

Associated Gene:

Gene:
SLC35F3
Ensembl Gene ID:
ENSAPLG00000008027
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030464
23982926 - 24034992
52067
ENSAPLT00000008332
23899756 - 24034992
135237
ENSAPLT00000047185
23867298 - 24034992
167695
ENSAPLT00000043199
23849816 - 24034992
185177
ENSAPLT00000033103
23982538 - 24034992
52455