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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24032547_24033311_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24032547 - 24033311
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCCACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TCCCACGTAATA
Flanking Amino Acid:
GIVLSVPVNAVVDHYTSEIV
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
65.5
0.35
1
58.7
36.8
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
46.2
-0.2
2.1
57.2
42.6

Associated Gene:

Gene:
SLC35F3
Ensembl Gene ID:
ENSAPLG00000008027
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033103
23982538 - 24034992
52455
ENSAPLT00000030464
23982926 - 24034992
52067
ENSAPLT00000008332
23899756 - 24034992
135237
ENSAPLT00000047185
23867298 - 24034992
167695
ENSAPLT00000043199
23849816 - 24034992
185177