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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24046485_24047578_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24046485 - 24047578
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CCATATTTAAGT
Flanking Amino Acid:
CFPEKSLLLLGNEHEGIPAN
Intron Amino Acid Position:
1183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
84.4
0.77
0.7
77.4
31.4
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
50.4
0.09
1.9
65
45.6

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007987
24046224 - 24079762
33539
ENSAPLT00000007982
24046322 - 24079240
32919