Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24048994_24050017_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24048994 - 24050017

Intron Length:

1024

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTTG

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTGTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

ATCACTTTAAAT

Flanking Amino Acid:

SLIDKPTNLGGLCRTSEIFG

Intron Amino Acid Position:

1096

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.4

0.95

0.8

79.5

36.8

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

77.3

0.61

0.8

72.4

32.2

Minor 5ss

40.3

-1.1

3.3

49.2

Minor BPS

65.2

0.56

1.4

76.36

40.1

Associated Gene:

Gene:

TARBP1

Ensembl Gene ID:

ENSAPLG00000007666

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007987

24046224 - 24079762

33539

ENSAPLT00000007982

24046322 - 24079240

32919