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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24052990_24053821_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24052990 - 24053821
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TAAGACTTAACA
Flanking Amino Acid:
DIILQNTSEKKPVLKKALIV
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
64
0.44
1.6
70.83
40.7

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007987
24046224 - 24079762
33539
ENSAPLT00000007982
24046322 - 24079240
32919