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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24055303_24056181_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24055303 - 24056181
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACTC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
AATATCCTAAGT
Flanking Amino Acid:
LLVLLPKLDQNFLCGTLDKV
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
64.4
39.8
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
88.9
0.88
0.7
88.2
29.1
Minor 5ss
42.7
-0.8
3.1
59.9
44.6
Minor BPS
48.7
-0
2
68.94
41.5

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007982
24046322 - 24079240
32919
ENSAPLT00000007987
24046224 - 24079762
33539