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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24062345_24062806_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24062345 - 24062806
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAAGCTT
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
YIEEKSSHPILLCEETSSQG
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.2
60.1
44.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90.1
0.9
0.7
84.7
29.5
Minor 5ss
39
-1.2
3.7
65.8
45.3
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007987
24046224 - 24079762
33539