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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24062345_24063054_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24062345 - 24063054
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
KKPSYIEEKSSLCEETSSQG
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90.1
0.9
0.7
84.7
29.5
Minor 5ss
36.8
-1.5
3.2
49.6
46.6
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007982
24046322 - 24079240
32919