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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24062819_24063054_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24062819 - 24063054
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGAGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAG
U12 Branch Point Sequence:
AGTTCTTGAGCT
Flanking Amino Acid:
KKPSYIEEKSSHPILLCEET
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
59.9
0.25
1.6
59.3
47.1
Major PPT
71.2
0.48
1
69.6
40.4
Minor 5ss
36.8
-1.5
3.2
49.6
46.6
Minor BPS
58.6
0.35
1.7
76.39
39.9

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007987
24046224 - 24079762
33539