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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24064917_24065999_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24064917 - 24065999
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTAGTTTACTT
Flanking Amino Acid:
RQLTTNELSTVGDLDRCDLY
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.1
37.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.3
0.68
0.7
80
25.4
Minor 5ss
37.9
-1.4
2.8
52.3
44.3
Minor BPS
51.3
0.12
2
75.87
41.7

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007987
24046224 - 24079762
33539
ENSAPLT00000007982
24046322 - 24079240
32919