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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24072173_24072859_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24072173 - 24072859
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGATTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTATCTTAATT
Flanking Amino Acid:
LQTAMHLTDVEKVSLPEVSS
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.5
0.75
0.8
81.4
36.2
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
75.5
0.88
1.2
85.2
34.9

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007982
24046322 - 24079240
32919