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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24076505_24077739_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24076505 - 24077739
Intron Length:
1235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCCCTTTTATC
Flanking Amino Acid:
HLPNSLGFSEFVIGPLMDAL
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
80.4
0.68
0.8
80.6
29.8
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
57.8
0.23
1.6
67.57
38.5

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007982
24046322 - 24079240
32919