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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24077889_24078375_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24077889 - 24078375
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCACTGTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73.6
0.53
1
69
40.8
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
51.3
0.12
2
69.41
42

Associated Gene:

Gene:
TARBP1
Ensembl Gene ID:
ENSAPLG00000007666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007982
24046322 - 24079240
32919
ENSAPLT00000007987
24046224 - 24079762
33539