About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2426583_2427709_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2426583 - 2427709
Intron Length:
1127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTTATTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
ANAANKKVIQGATQNSASAP
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.9
0.45
1
63.4
42
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
SNRPB2
Ensembl Gene ID:
ENSAPLG00000012904
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013445
2422792 - 2429362
6571