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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24267808_24302579_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24267808 - 24302579
Intron Length:
34772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GCAGGCTTAACA
Flanking Amino Acid:
LLTKLPTISQRPGMEHPRGF
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
80.3
0.68
0.7
75.3
26.8
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
53
0.09
1.9
60.61
45.2

Associated Gene:

Gene:
TOMM20
Ensembl Gene ID:
ENSAPLG00000004030
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018290
24267706 - 24307717
40012