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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2428470_2428981_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2428470 - 2428981
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTCTTTTAAAG
Flanking Amino Acid:
NEMMLSMLFNQFPGFKEVRL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78.1
0.63
1
78.9
32.8
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
65.1
0.33
1.4
69.62
37.6

Associated Gene:

Gene:
SNRPB2
Ensembl Gene ID:
ENSAPLG00000012904
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013445
2422792 - 2429362
6571