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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24301473_24302579_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24301473 - 24302579
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTAATT
Flanking Amino Acid:
LLTKLPTISQRIVSAQCLAE
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.8
0.78
0.7
79.2
26.5
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
58.9
0.36
2.1
84.41
36.8

Associated Gene:

Gene:
TOMM20
Ensembl Gene ID:
ENSAPLG00000004030
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025238
24301428 - 24308425
6998
ENSAPLT00000004148
24301036 - 24307717
6682