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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24302723_24302998_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24302723 - 24302998
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTGATTTCAAAC
Flanking Amino Acid:
IQLGEELLAQGEYEKGVDHL
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.8
0.6
1
70.8
39.5
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
48.9
-0.1
1.6
60.07
39.1

Associated Gene:

Gene:
TOMM20
Ensembl Gene ID:
ENSAPLG00000004030
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020877
24294417 - 24307717
13301
ENSAPLT00000018290
24267706 - 24307717
40012
ENSAPLT00000004148
24301036 - 24307717
6682
ENSAPLT00000025238
24301428 - 24308425
6998