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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24303081_24303806_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24303081 - 24303806
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
ATGTGTGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTCAGTTTTACT
Flanking Amino Acid:
LAKERAGLSKLPDLKDAEAV
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
72.6
0.51
1
65
45.2
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
49.2
0.02
2.1
72.32
44.7

Associated Gene:

Gene:
TOMM20
Ensembl Gene ID:
ENSAPLG00000004030
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020877
24294417 - 24307717
13301
ENSAPLT00000018290
24267706 - 24307717
40012
ENSAPLT00000004148
24301036 - 24307717
6682
ENSAPLT00000025238
24301428 - 24308425
6998