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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24303854_24304231_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24303854 - 24304231
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGATAG
5'SS Class:
major
3'SS Sequence:
TTTATTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTTACAG
Flanking Amino Acid:
IVYFQVKVAQGRKKQKLAKE
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
69.8
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
84.3
30.6
Minor 5ss
33.6
-1.9
2.9
38.8
46.4
Minor BPS
57.3
0.09
1.8
65.06
42.6

Associated Gene:

Gene:
TOMM20
Ensembl Gene ID:
ENSAPLG00000004030
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020877
24294417 - 24307717
13301
ENSAPLT00000018290
24267706 - 24307717
40012
ENSAPLT00000004148
24301036 - 24307717
6682