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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24303854_24308042_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24303854 - 24308042
Intron Length:
4189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTATTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTTACAG
Flanking Amino Acid:
DPNFKSRLRERRKKQKLAKE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
66.6
39.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
84.3
30.6
Minor 5ss
32.7
-2
3.3
39
39.9
Minor BPS
57.3
0.09
1.8
65.06
42.6

Associated Gene:

Gene:
TOMM20
Ensembl Gene ID:
ENSAPLG00000004030
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025238
24301428 - 24308425
6998