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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24308722_24309313_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24308722 - 24309313
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAG
U12 Branch Point Sequence:
CTGTTCCCACAG
Flanking Amino Acid:
GKGFGYILFENTDAVHLALK
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
45.1
-0.3
1.7
49.3
44.7
Major PPT
74.7
0.55
0.8
68.2
32.1
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
37.7
-1
2
40.77
43.4

Associated Gene:

Gene:
RBM34
Ensembl Gene ID:
ENSAPLG00000004344
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004466
24308446 - 24315019
6574