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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24311028_24311114_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24311028 - 24311114
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAA
U12 Branch Point Sequence:
AGTGTCTTACCT
Flanking Amino Acid:
RVDIASKNSLHDNKRSVFLG
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
53
0.08
1
61.4
34.3
Major PPT
85.8
0.81
0.7
85.6
29.2
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
58.5
0.35
1.7
74.4
42.5

Associated Gene:

Gene:
RBM34
Ensembl Gene ID:
ENSAPLG00000004344
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004466
24308446 - 24315019
6574