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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24311449_24311913_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24311449 - 24311913
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
TTTCCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATTATTTAAAT
Flanking Amino Acid:
DTLSKKLAAIKRKIHPNVKY
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
75.2
35.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.6
0.78
0.8
76.7
37.4
Minor 5ss
43.2
-0.8
3.1
59
39.8
Minor BPS
63.9
0.51
1.6
78.26
37.2

Associated Gene:

Gene:
RBM34
Ensembl Gene ID:
ENSAPLG00000004344
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004466
24308446 - 24315019
6574