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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24314594_24314720_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24314594 - 24314720
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TTTCCCGTAACT
Flanking Amino Acid:
PPPVLVAVPRENKKRKHAEV
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.3
43.9
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
82.9
0.74
1
82.6
32.8
Minor 5ss
28.7
-2.4
2.7
25.5
36.2
Minor BPS
72.6
0.79
2
93.68
34.1

Associated Gene:

Gene:
RBM34
Ensembl Gene ID:
ENSAPLG00000004344
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004466
24308446 - 24315019
6574