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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24314851_24314981_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24314851 - 24314981
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGCGTCAG
5'SS Class:
major
3'SS Sequence:
CCCTCCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTAAC
U12 Branch Point Sequence:
TGGCCGTTAACG
Flanking Amino Acid:
ASRRAAEPLPGAGGDYVVGQ
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
56
44.7
Major BPS
62.1
0.3
1.2
65
38.7
Major PPT
74.2
0.54
0.7
67.5
26
Minor 5ss
26.6
-2.7
2.8
23.1
37.2
Minor BPS
53.7
-0
2.2
61.68
45.7

Associated Gene:

Gene:
RBM34
Ensembl Gene ID:
ENSAPLG00000004344
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004466
24308446 - 24315019
6574