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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24321422_24324049_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24321422 - 24324049
Intron Length:
2628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTGTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTGTAATC
Flanking Amino Acid:
SVNNKKKSKTTNSSDSEELS
Intron Amino Acid Position:
1122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.2
32.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.7
0.83
0.7
84.7
30.2
Minor 5ss
37.9
-1.4
2.7
45.5
37.1
Minor BPS
56.8
0.19
2
70.36
35.6

Associated Gene:

Gene:
ARID4B
Ensembl Gene ID:
ENSAPLG00000004422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019607
24317551 - 24373611
56061
ENSAPLT00000004606
24317551 - 24373611
56061