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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2432482_2432956_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2432482 - 2432956
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCATTCTTGATC
Flanking Amino Acid:
KKLCADDDCVYTISLVRAEE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
67.8
0.54
1.2
69.35
36.7

Associated Gene:

Gene:
OTOR
Ensembl Gene ID:
ENSAPLG00000012952
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013483
2432358 - 2436970
4613