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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24328657_24329486_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24328657 - 24329486
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTTCT
5'SS Class:
major
3'SS Sequence:
TTCATTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCACA
Flanking Amino Acid:
PKIKHRKKIKNKTDKEKEEK
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.3
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
74
0.54
0.9
69
36.1
Minor 5ss
47
-0.3
2.9
68.1
42.9
Minor BPS
67.8
0.55
2
84.69
35.1

Associated Gene:

Gene:
ARID4B
Ensembl Gene ID:
ENSAPLG00000004422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004606
24317551 - 24373611
56061
ENSAPLT00000019607
24317551 - 24373611
56061