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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24329572_24336268_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24329572 - 24336268
Intron Length:
6697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
AAAACCATAAAT
Flanking Amino Acid:
YLVHYCGWNVRYDEWIKADK
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
75
38.1
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
85.9
0.81
0.7
84.8
30
Minor 5ss
45.1
-0.5
2.6
59
45.4
Minor BPS
51.7
0.13
1.8
68.6
40.8

Associated Gene:

Gene:
ARID4B
Ensembl Gene ID:
ENSAPLG00000004422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004606
24317551 - 24373611
56061