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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24329572_24345761_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24329572 - 24345761
Intron Length:
16190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
AAAACCATAAAT
Flanking Amino Acid:
NTEAEEKEKSGYDEWIKADK
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
73.2
39.3
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
85.9
0.81
0.7
84.8
30
Minor 5ss
40.1
-1.1
2.8
44.4
43.5
Minor BPS
51.7
0.13
1.8
68.6
40.8

Associated Gene:

Gene:
ARID4B
Ensembl Gene ID:
ENSAPLG00000004422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019607
24317551 - 24373611
56061