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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2433781_2436946_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2433781 - 2436946
Intron Length:
3166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
AACTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCCTTTTAACT
Flanking Amino Acid:
QEANKTVPTTDIDFFCE*
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
79
36.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.3
0.68
0.8
77.2
36.1
Minor 5ss
34.4
-1.8
3.3
49.4
46.6
Minor BPS
74.5
0.85
1.2
84.55
36.3

Associated Gene:

Gene:
OTOR
Ensembl Gene ID:
ENSAPLG00000012952
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013483
2432358 - 2436970
4613