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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24347491_24348572_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24347491 - 24348572
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTCTAATA
Flanking Amino Acid:
LVHKLGGFDNIESGAVWKQV
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.7
0.69
0.8
78.2
29.2
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
72.4
0.7
1.6
83.86
29.9

Associated Gene:

Gene:
ARID4B
Ensembl Gene ID:
ENSAPLG00000004422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004606
24317551 - 24373611
56061
ENSAPLT00000019607
24317551 - 24373611
56061