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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24400910_24405308_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24400910 - 24405308
Intron Length:
4399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAAAAGC
5'SS Class:
major
3'SS Sequence:
TCCATTTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATTTTGTTAATT
Flanking Amino Acid:
RLTFMMSSGCVFTTLSLRVN
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
63.5
41.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
65
0.34
1
62.1
37.7
Minor 5ss
33.7
-1.9
3.1
44.2
43.4
Minor BPS
66.5
0.6
2
85.57
35

Associated Gene:

Gene:
GGPS1
Ensembl Gene ID:
ENSAPLG00000005831
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006024
24400543 - 24419915
19373