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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24405426_24414559_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24405426 - 24414559
Intron Length:
9134

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCCTCATTG
Flanking Amino Acid:
EPYQYLLQLPGKQVRTKLSQ
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.7
84.1
34
Major BPS
80
0.75
1
78.6
31
Major PPT
78.7
0.65
0.8
74.1
29.4
Minor 5ss
33.5
-1.9
4
49
47.2
Minor BPS
61.2
0.21
1.9
71.65
41.7

Associated Gene:

Gene:
GGPS1
Ensembl Gene ID:
ENSAPLG00000005831
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006024
24400543 - 24419915
19373