Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2444115_2444576_F

Intron Information:

Intron Rank:

137842

Intron Class:

major

Intron Phase:

Intron Coordinates:

2444115 - 2444576

Intron Length:

462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTATC

5'SS Class:

major

3'SS Sequence:

TTTTTCTGTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

TCTTGCTAAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

78.6

35.6

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

83.9

0.76

0.8

81.4

30.6

Minor 5ss

43.2

-0.7

2.9

64.8

39.3

Minor BPS

53.2

0.18

2.2

76.73

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024231

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044953

2441298 - 2444820

3523

ENSAPLT00000040050

2443593 - 2444820

1228