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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24442942_24443635_F

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
24442942 - 24443635
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TATGAAATTTCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTTTTCTTAATA
Flanking Amino Acid:
QKEEISRTCANIRHINLSKN
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.2
57.8
41.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
69.6
0.44
1
64.1
45.5
Minor 5ss
96.3
1.56
0.7
91.7
17.5
Minor BPS
80.6
0.96
1.1
82.43
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006059
24429283 - 24452840
23558