About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24443736_24445163_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24443736 - 24445163
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTCA
5'SS Class:
major
3'SS Sequence:
TCTTTTTACACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTCTTTTTACAC
Flanking Amino Acid:
QVPNLETLNISENKMKFPST
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
72.7
32.4
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
83.4
0.75
0.8
79.9
31.1
Minor 5ss
45.9
-0.4
2.5
59.3
45.3
Minor BPS
54.8
0.13
1.7
66.32
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006059
24429283 - 24452840
23558