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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24445267_24446177_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24445267 - 24446177
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTATATTAAATT
Flanking Amino Acid:
LNQTEITWTEVLVCAQGWPA
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.9
33.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75.9
0.58
0.9
73.8
36.9
Minor 5ss
34.1
-1.8
3
44.4
43.1
Minor BPS
57.6
0.32
1.8
77.42
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006059
24429283 - 24452840
23558