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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24446654_24448029_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24446654 - 24448029
Intron Length:
1376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTGTT
5'SS Class:
major
3'SS Sequence:
TATTAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATCTATTAAAT
Flanking Amino Acid:
DQLHQIAYLPRLEQLILRNT
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
76.2
39.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.1
0.59
1
71.8
42.3
Minor 5ss
42.8
-0.8
3.6
66.4
45.1
Minor BPS
58.9
0.36
1.7
77.41
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006059
24429283 - 24452840
23558