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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24448856_24449308_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24448856 - 24449308
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CGTGCCAGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATAATTTTATT
Flanking Amino Acid:
SQLEVLNKSEILPAERKGAE
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.6
32.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.2
0.28
1.1
54
40.3
Minor 5ss
33.3
-1.9
3.5
48.8
47.4
Minor BPS
49.5
0.04
1.8
70.67
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006059
24429283 - 24452840
23558