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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24451068_24452412_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24451068 - 24452412
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTTTTCTAACC
Flanking Amino Acid:
EQKPVEKKLPESMTIQRVKG
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
87.3
0.84
0.7
80
32
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
65.7
0.47
1.6
76.94
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006059
24429283 - 24452840
23558