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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24452505_24452747_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24452505 - 24452747
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTAAACTGAAAT
Flanking Amino Acid:
ELKLSYESSKLAGKEVELDN
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.1
24.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.8
0.78
0.7
78.3
34.8
Minor 5ss
35.8
-1.6
2.8
40.3
40.1
Minor BPS
52.4
0.15
1.8
73.81
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006059
24429283 - 24452840
23558