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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24455257_24458064_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24455257 - 24458064
Intron Length:
2808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ACGTGCTCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
ATTGTACAAACA
Flanking Amino Acid:
KLDRPNIWWGNFRLNWAVDR
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
71
0.47
0.9
66.2
40.2
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
42.7
-0.5
2.1
59.04
40.6

Associated Gene:

Gene:
B3GALNT2
Ensembl Gene ID:
ENSAPLG00000006156
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006382
24454121 - 24481923
27803