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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24458191_24459944_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24458191 - 24459944
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AGCATCTTATCA
Flanking Amino Acid:
VPAKLLNFYRWTVETTSFDL
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
41.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.6
0.73
0.9
76.6
37.7
Minor 5ss
39.7
-1.2
2.8
46.4
44.2
Minor BPS
51.3
0.04
1.6
58.81
40.8

Associated Gene:

Gene:
B3GALNT2
Ensembl Gene ID:
ENSAPLG00000006156
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006382
24454121 - 24481923
27803