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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24460129_24460988_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24460129 - 24460988
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TCTTTGTTTAGT
Flanking Amino Acid:
IAGGFIYTIQEGDALLKSLH
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
86.6
0.82
0.8
84.6
30.3
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
46
-0.2
2.5
70.83
46.3

Associated Gene:

Gene:
B3GALNT2
Ensembl Gene ID:
ENSAPLG00000006156
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006382
24454121 - 24481923
27803