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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24461068_24461664_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24461068 - 24461664
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTTCCATTAATC
Flanking Amino Acid:
DGGGVFRIITAGEGSLPHEL
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.3
42.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
76.8
0.6
0.9
72.9
36.2
Minor 5ss
28.6
-2.5
2.8
33
41.8
Minor BPS
71.9
0.67
1.5
81.43
32.2

Associated Gene:

Gene:
B3GALNT2
Ensembl Gene ID:
ENSAPLG00000006156
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006382
24454121 - 24481923
27803