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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24461776_24467345_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24461776 - 24467345
Intron Length:
5570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTCTCTTAACA
Flanking Amino Acid:
KPVEQFILPESFEGTIVWES
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.1
0.54
0.9
69.1
35.8
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
71.9
0.68
1.2
73.25
38.4

Associated Gene:

Gene:
B3GALNT2
Ensembl Gene ID:
ENSAPLG00000006156
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006382
24454121 - 24481923
27803