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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24469348_24470466_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24469348 - 24470466
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTCATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTTTTCATA
Flanking Amino Acid:
SCKLLNISNPALNQEIEAFS
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
63.1
42.9
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.8
85
28.8
Minor 5ss
29.9
-2.3
3.3
38.8
46.5
Minor BPS
57.9
0.24
1.7
69.67
37.9

Associated Gene:

Gene:
B3GALNT2
Ensembl Gene ID:
ENSAPLG00000006156
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006382
24454121 - 24481923
27803